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Table with summarize info [table 1]

For all observations

Characteristic N = 1291
Group
LEX 129 / 129 (100%)
Gender
F 128 / 129 (99%)
U 1 / 129 (0.8%)
DNAmAge 58 (13)
DNAmAgeHannum 60 (14)
DNAmPhenoAge 56 (14)
DNAmAgeSkinBloodClock 57 (13)
DNAmGrimAge 56 (11)
DNAmTL 6.82 (0.32)
AgeAccelerationResidual 0.4 (4.6)
AgeAccelerationResidualHannum -0.2 (4.0)
AgeAccelPheno -0.4 (4.3)
DNAmAgeSkinBloodClockAdjAge 0.2 (3.4)
AgeAccelGrim -0.44 (2.94)
DNAmTLAdjAge 0.03 (0.18)
IEAA 0.2 (4.2)
EEAA -0.3 (5.1)
Age 58 (15)
county
Fuyuan 63 / 129 (49%)
Xuanwe 66 / 129 (51%)
BMI 22.0 (3.5)
ses 58 / 129 (45%)
edu
1 90 / 129 (70%)
2 20 / 129 (16%)
3 14 / 129 (11%)
4 5 / 129 (3.9%)
curFuel
Smokeles 17 / 112 (15%)
Smoky 87 / 112 (78%)
Wood_and_or_Plant 8 / 112 (7.1%)
(Missing) 17
brthFuel
Mix 53 / 116 (46%)
Smokeles 5 / 116 (4.3%)
Smoky 47 / 116 (41%)
Wood 11 / 116 (9.5%)
(Missing) 13
cumFuel
Mix 82 / 119 (69%)
Smoky 37 / 119 (31%)
(Missing) 10
curStove
Firepit_and_unventilated 22 / 112 (20%)
Mix 19 / 112 (17%)
Portable_stove 20 / 112 (18%)
Ventilated 51 / 112 (46%)
(Missing) 17
bap_air 65 (87)
(Missing) 5
pm25_air 197 (176)
ANY_air 1,038 (1,792)
(Missing) 41
BPE_air 71 (92)
(Missing) 5
BaA_air 88 (145)
(Missing) 5
BbF_air 106 (143)
(Missing) 5
BkF_air 23 (32)
(Missing) 5
CHR_air 83 (133)
(Missing) 5
DBA_air 24 (36)
(Missing) 5
FLT_air 60 (136)
(Missing) 5
FLU_air 486 (680)
(Missing) 41
IPY_air 43 (51)
(Missing) 5
NAP_air 5,731 (8,737)
(Missing) 41
PHE_air 730 (1,054)
(Missing) 41
PYR_air 66 (139)
(Missing) 5
Benzanthracene_Chrysene_urine 0.92 (3.17)
(Missing) 2
Naphthalene_urine 224 (686)
Methylnaphthalene_2_urine 46 (59)
(Missing) 9
Methylnaphthalene_1_urine 20 (24)
(Missing) 4
Acenaphthene_urine 7 (11)
Phenanthrene_Anthracene_urine 204 (275)
Fluoranthene_urine 21 (23)
Pyrene_urine 0.71 (0.57)
(Missing) 18
CUR6_BC_PAH6 0.19 (0.98)
(Missing) 3
CUR6_PAH31 0.18 (0.93)
(Missing) 3
CUR6_NkF -0.09 (1.11)
(Missing) 3
CUR6_PM_RET -0.04 (0.98)
(Missing) 3
CUR6_NO2 0.12 (1.01)
(Missing) 3
CUR6_SO2 -0.13 (0.89)
(Missing) 3
CHLD5_X7 -0.04 (0.96)
(Missing) 3
CHLD5_X33 0.16 (1.00)
(Missing) 3
CHLD5_NkF -0.11 (1.11)
(Missing) 3
CHLD5_NO2 0.18 (1.09)
(Missing) 3
CHLD5_SO2 0.00 (0.91)
(Missing) 3
CUM6_BC_NO2_PM 0.12 (1.01)
(Missing) 3
CUM6_PAH36 0.20 (0.98)
(Missing) 3
CUM6_DlP -0.18 (1.03)
(Missing) 3
CUM6_NkF -0.02 (1.08)
(Missing) 3
CUM6_RET -0.13 (1.03)
(Missing) 3
CUM6_SO2 -0.08 (0.95)
(Missing) 3
MEAS6_BC_PM_RET -0.05 (1.05)
(Missing) 64
MEAS6_X31 0.00 (1.13)
(Missing) 64
MEAS6_X5 0.01 (1.02)
(Missing) 64
MEAS6_DlP 0.02 (1.00)
(Missing) 64
MEAS6_NkF 0.01 (1.02)
(Missing) 64
MEAS6_NO2_SO2 0.09 (1.04)
(Missing) 64
URI5_NAP_1M_2M 0.01 (0.96)
(Missing) 25
URI5_ACE -0.06 (0.99)
(Missing) 25
URI5_FLU_PHE -0.05 (0.95)
(Missing) 25
URI5_PYR -0.02 (0.91)
(Missing) 25
URI5_CHR -0.01 (1.01)
(Missing) 25
1 n / N (%); Mean (SD)

Fuel Types Summary table

Current Fuel vs Birth Fuel + Cumulative

##   brthFuel cumFuel Smokeles Smoky Wood_and_or_Plant NA
## 1      Mix     Mix        9    36                 6  2
## 2 Smokeles     Mix        2     3                 0  0
## 3    Smoky     Mix        3     7                 0  0
## 4    Smoky   Smoky        0    35                 0  2
## 5     Wood     Mix        2     4                 2  3
## 6     <NA>     Mix        1     2                 0  0
## 7     <NA>    <NA>        0     0                 0 10

PCA

Explore clocks

Clock values

Correlogram

Between clocks

Median absolute error

##               DNAmAge         DNAmAgeHannum          DNAmPhenoAge 
##              3.455101              3.380488              3.005900 
## DNAmAgeSkinBloodClock           DNAmGrimAge 
##              2.585191              4.063720

Scatterplots of age vs each epigenetic age

Explore Exposure Measurements

Correlogram

Between Ambient Exposure Measurements

Between Urinary Exposure Measurements

Between Ambient and Urinary Exposure Measurements

Between Clustered Exposure Measurements

Clocks vs Measurements

Pairplots

Urinary Exposure Measurements

Ambient Exposure Measurements

Clustered Exposure Measurements