Exploration
Seraphina Shi
Load Data from the Clock Calculator
Table with summarize info [table 1]
For all observations
| Characteristic | N = 1291 |
|---|---|
| Group | |
| LEX | 129 / 129 (100%) |
| Gender | |
| F | 128 / 129 (99%) |
| U | 1 / 129 (0.8%) |
| DNAmAge | 58 (13) |
| DNAmAgeHannum | 60 (14) |
| DNAmPhenoAge | 56 (14) |
| DNAmAgeSkinBloodClock | 57 (13) |
| DNAmGrimAge | 56 (11) |
| DNAmTL | 6.82 (0.32) |
| AgeAccelerationResidual | 0.4 (4.6) |
| AgeAccelerationResidualHannum | -0.2 (4.0) |
| AgeAccelPheno | -0.4 (4.3) |
| DNAmAgeSkinBloodClockAdjAge | 0.2 (3.4) |
| AgeAccelGrim | -0.44 (2.94) |
| DNAmTLAdjAge | 0.03 (0.18) |
| IEAA | 0.2 (4.2) |
| EEAA | -0.3 (5.1) |
| Age | 58 (15) |
| county | |
| Fuyuan | 63 / 129 (49%) |
| Xuanwe | 66 / 129 (51%) |
| BMI | 22.0 (3.5) |
| ses | 58 / 129 (45%) |
| edu | |
| 1 | 90 / 129 (70%) |
| 2 | 20 / 129 (16%) |
| 3 | 14 / 129 (11%) |
| 4 | 5 / 129 (3.9%) |
| curFuel | |
| Smokeles | 17 / 112 (15%) |
| Smoky | 87 / 112 (78%) |
| Wood_and_or_Plant | 8 / 112 (7.1%) |
| (Missing) | 17 |
| brthFuel | |
| Mix | 53 / 116 (46%) |
| Smokeles | 5 / 116 (4.3%) |
| Smoky | 47 / 116 (41%) |
| Wood | 11 / 116 (9.5%) |
| (Missing) | 13 |
| cumFuel | |
| Mix | 82 / 119 (69%) |
| Smoky | 37 / 119 (31%) |
| (Missing) | 10 |
| curStove | |
| Firepit_and_unventilated | 22 / 112 (20%) |
| Mix | 19 / 112 (17%) |
| Portable_stove | 20 / 112 (18%) |
| Ventilated | 51 / 112 (46%) |
| (Missing) | 17 |
| bap_air | 65 (87) |
| (Missing) | 5 |
| pm25_air | 197 (176) |
| ANY_air | 1,038 (1,792) |
| (Missing) | 41 |
| BPE_air | 71 (92) |
| (Missing) | 5 |
| BaA_air | 88 (145) |
| (Missing) | 5 |
| BbF_air | 106 (143) |
| (Missing) | 5 |
| BkF_air | 23 (32) |
| (Missing) | 5 |
| CHR_air | 83 (133) |
| (Missing) | 5 |
| DBA_air | 24 (36) |
| (Missing) | 5 |
| FLT_air | 60 (136) |
| (Missing) | 5 |
| FLU_air | 486 (680) |
| (Missing) | 41 |
| IPY_air | 43 (51) |
| (Missing) | 5 |
| NAP_air | 5,731 (8,737) |
| (Missing) | 41 |
| PHE_air | 730 (1,054) |
| (Missing) | 41 |
| PYR_air | 66 (139) |
| (Missing) | 5 |
| Benzanthracene_Chrysene_urine | 0.92 (3.17) |
| (Missing) | 2 |
| Naphthalene_urine | 224 (686) |
| Methylnaphthalene_2_urine | 46 (59) |
| (Missing) | 9 |
| Methylnaphthalene_1_urine | 20 (24) |
| (Missing) | 4 |
| Acenaphthene_urine | 7 (11) |
| Phenanthrene_Anthracene_urine | 204 (275) |
| Fluoranthene_urine | 21 (23) |
| Pyrene_urine | 0.71 (0.57) |
| (Missing) | 18 |
| CUR6_BC_PAH6 | 0.19 (0.98) |
| (Missing) | 3 |
| CUR6_PAH31 | 0.18 (0.93) |
| (Missing) | 3 |
| CUR6_NkF | -0.09 (1.11) |
| (Missing) | 3 |
| CUR6_PM_RET | -0.04 (0.98) |
| (Missing) | 3 |
| CUR6_NO2 | 0.12 (1.01) |
| (Missing) | 3 |
| CUR6_SO2 | -0.13 (0.89) |
| (Missing) | 3 |
| CHLD5_X7 | -0.04 (0.96) |
| (Missing) | 3 |
| CHLD5_X33 | 0.16 (1.00) |
| (Missing) | 3 |
| CHLD5_NkF | -0.11 (1.11) |
| (Missing) | 3 |
| CHLD5_NO2 | 0.18 (1.09) |
| (Missing) | 3 |
| CHLD5_SO2 | 0.00 (0.91) |
| (Missing) | 3 |
| CUM6_BC_NO2_PM | 0.12 (1.01) |
| (Missing) | 3 |
| CUM6_PAH36 | 0.20 (0.98) |
| (Missing) | 3 |
| CUM6_DlP | -0.18 (1.03) |
| (Missing) | 3 |
| CUM6_NkF | -0.02 (1.08) |
| (Missing) | 3 |
| CUM6_RET | -0.13 (1.03) |
| (Missing) | 3 |
| CUM6_SO2 | -0.08 (0.95) |
| (Missing) | 3 |
| MEAS6_BC_PM_RET | -0.05 (1.05) |
| (Missing) | 64 |
| MEAS6_X31 | 0.00 (1.13) |
| (Missing) | 64 |
| MEAS6_X5 | 0.01 (1.02) |
| (Missing) | 64 |
| MEAS6_DlP | 0.02 (1.00) |
| (Missing) | 64 |
| MEAS6_NkF | 0.01 (1.02) |
| (Missing) | 64 |
| MEAS6_NO2_SO2 | 0.09 (1.04) |
| (Missing) | 64 |
| URI5_NAP_1M_2M | 0.01 (0.96) |
| (Missing) | 25 |
| URI5_ACE | -0.06 (0.99) |
| (Missing) | 25 |
| URI5_FLU_PHE | -0.05 (0.95) |
| (Missing) | 25 |
| URI5_PYR | -0.02 (0.91) |
| (Missing) | 25 |
| URI5_CHR | -0.01 (1.01) |
| (Missing) | 25 |
| 1 n / N (%); Mean (SD) | |
Fuel Types Summary table
Current Fuel vs Birth Fuel + Cumulative
## brthFuel cumFuel Smokeles Smoky Wood_and_or_Plant NA
## 1 Mix Mix 9 36 6 2
## 2 Smokeles Mix 2 3 0 0
## 3 Smoky Mix 3 7 0 0
## 4 Smoky Smoky 0 35 0 2
## 5 Wood Mix 2 4 2 3
## 6 <NA> Mix 1 2 0 0
## 7 <NA> <NA> 0 0 0 10PCA
Explore clocks
Clock values
Correlogram
Between clocks
Median absolute error
## DNAmAge DNAmAgeHannum DNAmPhenoAge
## 3.455101 3.380488 3.005900
## DNAmAgeSkinBloodClock DNAmGrimAge
## 2.585191 4.063720Scatterplots of age vs each epigenetic age
Explore Exposure Measurements
Correlogram
Between Ambient Exposure Measurements
Between Urinary Exposure Measurements
Between Ambient and Urinary Exposure Measurements
Between Clustered Exposure Measurements
